3M9C Oxidoreductase date Mar 22, 2010
title Crystal Structure Of The Membrane Domain Of Respiratory Comp Escherichia Coli
authors R.G.Efremov, R.Baradaran, L.A.Sazanov
compound source
Molecule: Nadh-Quinone Oxidoreductase Subunit Nuol
Chain: L
Fragment: Membrane Domain
Ec: 1.6.5.3
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bl21

Molecule: Nadh-Quinone Oxidoreductase Subunit Nuom
Chain: M
Fragment: Membrane Domain
Ec: 1.6.5.3
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bl21

Molecule: Nadh-Quinone Oxidoreductase Subunit Nuon
Chain: N
Fragment: Membrane Domain
Ec: 1.6.5.3
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bl21

Molecule: Nadh-Quinone Oxidoreductase Subunits Nuoa,J And K
Chain: R
Fragment: Membrane Domain
Ec: 1.6.5.3
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Bl21
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.060 182.170 185.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand
enzyme Oxidoreductase E.C.1.6.5.3 BRENDA
Primary referenceThe architecture of respiratory complex I., Efremov RG, Baradaran R, Sazanov LA, Nature. 2010 May 27;465(7297):441-5. PMID:20505720
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3m9c.pdb1.gz) 75 Kb
  • CSU: Contacts of Structural Units for 3M9C
  • Structure Factors (1580 Kb)
  • Retrieve 3M9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M9C from S2C, [Save to disk]
  • View 3M9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M9C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M9C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m9c_N] [3m9c_R] [3m9c] [3m9c_M] [3m9c_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3M9C
  • Community annotation for 3M9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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