3MBF Lyase date Mar 25, 2010
title Crystal Structure Of Fructose Bisphosphate Aldolase From Encephalitozoon Cuniculi, Bound To Fructose 1,6-Bisphosphat
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Fructose-Bisphosphate Aldolase
Chain: A
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Encephalitozoon Cuniculi
Organism_common: Microsporidian Parasite
Organism_taxid: 6035
Gene: Ecu01_0240
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: C 2 2 21
R_factor 0.165 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.460 135.820 61.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand 2FP enzyme Lyase E.C.4.1.2.13 BRENDA
Gene ECU01
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of fructose bisphosphate aldolase from Encephalitozoon cuniculi., Gardberg A, Sankaran B, Davies D, Bhandari J, Staker B, Stewart L, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1055-9. Epub 2011 Aug 13. PMID:21904050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3mbf.pdb1.gz) 218 Kb
  • LPC: Ligand-Protein Contacts for 3MBF
  • CSU: Contacts of Structural Units for 3MBF
  • Structure Factors (319 Kb)
  • Retrieve 3MBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MBF from S2C, [Save to disk]
  • Re-refined 3mbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MBF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MBF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mbf_A] [3mbf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MBF
  • Community annotation for 3MBF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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