3MDZ Lyase date Mar 31, 2010
title Crystal Structure Of Human Carbonic Anhydrase Vii [Isoform 1
authors E.Ugochukwu, N.Shafqat, E.Pilka, A.Chaikuad, T.Krojer, J.Muniz, J. J.Bray, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, F.Von D E.P.Carpenter, W.W.Yue, U.Oppermann, Structural Genomics Conso (Sgc)
compound source
Molecule: Carbonic Anhydrase 7
Chain: A
Fragment: Residues In Unp 24-281
Synonym: Ca7, Carbonic Anhydrase Vii, Ca-Vii, Carbonate Deh Vii;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.710 97.746 82.443 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.32 Å
ligand EZL, GOL, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3mdz.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3MDZ
  • CSU: Contacts of Structural Units for 3MDZ
  • Structure Factors (187 Kb)
  • Retrieve 3MDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MDZ from S2C, [Save to disk]
  • Re-refined 3mdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MDZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MDZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mdz_A] [3mdz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MDZ: [Carb_anhydrase ] by SMART
  • Other resources with information on 3MDZ
  • Community annotation for 3MDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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