3ME9	Transcription	date	Mar 31, 2010
title	Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
authors	C.Bian, W.Tempel, C.Xu, Y.Guo, A.Dong, L.Crombet, C.Bountra, J.Weig C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Gen Consortium (Sgc)
compound		source
Molecule: Saga-Associated Factor 29 Homolog Chain: A, B Fragment: Unp Residues 115-293 Synonym: Coiled-Coil Domain-Containing Protein 101 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccdc101, Sgf29 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
Molecule: Histone H3 Chain: C, D Fragment: Unp Residues 2-9 Synonym: H3k4me3 8mer Engineered: Yes		Synthetic: Yes Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Other_details: H3k4me3 8mer
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.038 65.434 105.619 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.37 Å
ligand	GOL, M3L, MSE, SO4, UNX	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (3me9.pdb1.gz) 67 Kb Biological Unit Coordinates (3me9.pdb2.gz) 34 Kb Biological Unit Coordinates (3me9.pdb3.gz) 34 Kb LPC: Ligand-Protein Contacts for 3ME9 CSU: Contacts of Structural Units for 3ME9 Structure Factors (1471 Kb) Retrieve 3ME9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ME9 from S2C, [Save to disk] Re-refined 3me9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ME9 in 3D

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Visual 3D analysis of 3ME9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ME9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3me9_A] [3me9] [3me9_D] [3me9_B] [3me9_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ME9

Community annotation for 3ME9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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