3ME9 Crystal structure of SGF29 in complex with H3K4me3 peptide date
authors Bian, C., Tempel, W., Xu, C., Guo, Y., Dong, A., Crombet, L., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.21353
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.37
ligand GOL, M3L, MSE, SO4, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3me9.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (3me9.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (3me9.pdb3.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3ME9
  • CSU: Contacts of Structural Units for 3ME9
  • Structure Factors (1471 Kb)
  • Retrieve 3ME9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ME9 from S2C, [Save to disk]
  • Re-refined 3me9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ME9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ME9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ME9, from MSDmotif at EBI
  • Fold representative 3me9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3me9_A] [3me9] [3me9_D] [3me9_B] [3me9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ME9
  • Community annotation for 3ME9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science