3MEU Transcription date Mar 31, 2010
title Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
authors C.B.Bian, C.Xu, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.M.Edwards A.Bochkarev, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Saga-Associated Factor 29 Homolog
Chain: A, B
Fragment: Unp Residues 115-293
Synonym: Coiled-Coil Domain-Containing Protein 101
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccdc101, Sgf29
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl

Molecule: Histone H3
Chain: C, D
Fragment: Unp Residues 2-14
Synonym: H3r2me2sk4me3 14mer
Engineered: Yes

Synthetic: Yes
Organism_scientific: Xenopus Laevis
Organism_common: Clawed Frog,Common Platanna,Platanna
Organism_taxid: 8355
Other_details: H3r2me2sk4me3 14mer
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.140 65.483 106.004 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand 2MR, M3L, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3meu.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 3MEU
  • CSU: Contacts of Structural Units for 3MEU
  • Structure Factors (1288 Kb)
  • Retrieve 3MEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MEU from S2C, [Save to disk]
  • Re-refined 3meu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MEU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3meu] [3meu_B] [3meu_C] [3meu_D] [3meu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MEU
  • Community annotation for 3MEU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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