3MHC Lyase date Apr 07, 2010
title Crystal Structure Of Human Cabonic Anhydrase II In Adduct Wi Adamantyl Analogue Of Acetazolamide In A Novel Hydrophobic Pocket
authors B.S.Avvaru
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratas Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plyss
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.235 41.351 71.898 90.00 104.24 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ARZ, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarbonic anhydrase inhibitors. The X-ray crystal structure of human isoform II in adduct with an adamantyl analogue of acetazolamide resides in a less utilized binding pocket than most hydrophobic inhibitors., Avvaru BS, Wagner JM, Maresca A, Scozzafava A, Robbins AH, Supuran CT, McKenna R, Bioorg Med Chem Lett. 2010 Aug 1;20(15):4376-81. Epub 2010 Jun 17. PMID:20605094
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3mhc.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3MHC
  • CSU: Contacts of Structural Units for 3MHC
  • Structure Factors (320 Kb)
  • Retrieve 3MHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MHC from S2C, [Save to disk]
  • Re-refined 3mhc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MHC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mhc] [3mhc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MHC: [Carb_anhydrase ] by SMART
  • Other resources with information on 3MHC
  • Community annotation for 3MHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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