3MIN Nitrogen Fixation date Dec 20, 1996
title Nitrogenase Mofe Protein From Azotobacter Vinelandii, Oxidiz
authors J.W.Peters, M.H.B.Stowell, S.M.Soltis, M.W.Day, J.Kim, D.C.Rees
compound source
Molecule: Nitrogenase Molybdenum Iron Protein
Chain: A, C
Ec: 1.18.6.1
Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 354
Strain: Wild-Type

Molecule: Nitrogenase Molybdenum Iron Protein
Chain: B, D
Ec: 1.18.6.1

Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 354
Strain: Wild-Type
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.000 131.300 81.000 90.00 110.70 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand CA, CFM, CLF, HCA enzyme Oxidoreductase E.C.1.18.6.1 BRENDA
related structures by homologous chain: 1H1L, 2MIN
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceRedox-dependent structural changes in the nitrogenase P-cluster., Peters JW, Stowell MH, Soltis SM, Finnegan MG, Johnson MK, Rees DC, Biochemistry 1997 Feb 11;36(6):1181-7. PMID:9063865
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk]
  • Biological Unit Coordinates (3min.pdb1.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 3MIN
  • CSU: Contacts of Structural Units for 3MIN
  • Likely Quarternary Molecular Structure file(s) for 3MIN
  • Retrieve 3MIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MIN from S2C, [Save to disk]
  • View 3MIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MIN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MIN, from MSDmotif at EBI
  • Genome occurence of 3MIN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3mina_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3minb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d3minc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d3mind_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3min_D] [3min_B] [3min] [3min_A] [3min_C]
  • SWISS-PROT database: [P07328] [P07329]
  • Domain organization of [NIFD_AZOVI] [NIFK_AZOVI] by SWISSPFAM
  • Other resources with information on 3MIN
  • Community annotation for 3MIN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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