3MK0 Hydrolase date Apr 13, 2010
title Refinement Of Placental Alkaline Phosphatase Complexed With Nitrophenyl
authors B.Stec, A.Cheltsov, J.L.Millan
compound source
Molecule: Alkaline Phosphatase, Placental Type
Chain: A
Synonym: Placental Alkaline Phosphatase 1, Plap-1, Alkaline Phosphatase Regan Isozyme;
Ec: 3.1.3.1
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.135 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.022 113.894 106.594 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ACT, CA, MG, NAG, NPO, PO4, SEP, ZN enzyme Hydrolase E.C.3.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined structures of placental alkaline phosphatase show a consistent pattern of interactions at the peripheral site., Stec B, Cheltsov A, Millan JL, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Aug 1;66(Pt, 8):866-70. Epub 2010 Jul 27. PMID:20693656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3mk0.pdb1.gz) 349 Kb
  • LPC: Ligand-Protein Contacts for 3MK0
  • CSU: Contacts of Structural Units for 3MK0
  • Structure Factors (633 Kb)
  • Retrieve 3MK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MK0 from S2C, [Save to disk]
  • Re-refined 3mk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MK0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MK0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mk0] [3mk0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MK0: [alkPPc ] by SMART
    • Other resources with information on 3MK0
  • Community annotation for 3MK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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