3MKV	Hydrolase	date	Apr 15, 2010
title	Crystal Structure Of Amidohydrolase Eaj56179
authors	Y.Patskovsky, J.Bonanno, S.Ozyurt, J.M.Sauder, J.Freeman, B.Wu, D. K.Bain, L.Rodgers, S.R.Wasserman, F.M.Raushel, S.K.Burley, S.C.A York Sgx Research Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: Putative Amidohydrolase Chain: A, B, C, D, E, F, G, H Engineered: Yes		Organism_scientific: Unidentified Organism_taxid: 32644 Gene: Eaj56179 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Psgx3(Bc) Other_details: Environmental Sample From Sargasso Sea
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.022 198.599 104.294 90.00 107.76 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CO3, GOL, KCX, SO4, ZN	enzyme
note	3MKV supersedes 2R8C
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Functional Identification and Structure Determination of Two Novel Prolidases from cog1228 in the Amidohydrolase Superfamily., Xiang DF, Patskovsky Y, Xu C, Fedorov A, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo S, Raushel FM, Biochemistry. 2010 Jul 6. PMID:20604542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (534 Kb) [Save to disk] Biological Unit Coordinates (3mkv.pdb1.gz) 515 Kb LPC: Ligand-Protein Contacts for 3MKV CSU: Contacts of Structural Units for 3MKV Structure Factors (4129 Kb) Retrieve 3MKV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MKV from S2C, [Save to disk] Re-refined 3mkv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MKV in 3D

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Visual 3D analysis of 3MKV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MKV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mkv_A] [3mkv] [3mkv_C] [3mkv_F] [3mkv_B] [3mkv_H] [3mkv_E] [3mkv_G] [3mkv_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3MKV

Community annotation for 3MKV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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