3MO1 Immune System date Apr 22, 2010
title Crystal Structure Of The Non-Neutralizing Hiv Antibody 13h11 Fragment
authors N.I.Nicely, S.M.Dennison, G.Kelsoe, H.X.Liao, S.M.Alam, B.F.Hayn
compound source
Molecule: Anti-Hiv-1 Antibody 13h11 Light Chain
Chain: A
Fragment: Fusion Protein Between Mouse Fv And A Human Fc
Engineered: Yes
 Organism_scientific: Mus Musculus,Homo Sapiens
Organism_common: Mouse,Human
Organism_taxid: 10090,9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t Cell
Expression_system_organ: Kidney
Expression_system_vector_type: Plasmid

Molecule: Anti-Hiv-1 Antibody 13h11 Heavy Chain
Chain: B
Fragment: Fusion Protein Between Mouse Fv And A Human Fc
Engineered: Yes
Organism_scientific: Mus Musculus,Homo Sapiens
Organism_common: Mouse,Human
Organism_taxid: 10090,9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t Cell
Expression_system_organ: Kidney
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.187 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.365 60.436 80.118 90.00 91.22 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3mo1.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3MO1
  • CSU: Contacts of Structural Units for 3MO1
  • Structure Factors (265 Kb)
  • Retrieve 3MO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MO1 from S2C, [Save to disk]
  • Re-refined 3mo1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MO1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MO1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mo1] [3mo1_B] [3mo1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3MO1: [IG_like] [IGv ] by SMART
    • Other resources with information on 3MO1
  • Community annotation for 3MO1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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