3MP8 Histone Binding Protein date Apr 26, 2010
title Crystal Structure Of Sgf29 Tudor Domain
authors J.Li, M.Wu, J.Ruan, J.Zang
compound source
Molecule: Maltose-Binding Periplasmic Protein,Linker,Saga-A Factor 29;
Chain: A
Synonym: Mbp,Sgf29
Engineered: Yes
Other_details: Chimera Of Maltose-Binding Periplasmic Prote Associated Factor 29
Organism_scientific: Escherichia Coli K-12, Unidentified, Saccharomyces Cerevisiae S288c;
Organism_taxid: 83333, 32644, 559292
Strain: K12, S288c
Gene: Male, Sgf29
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23b
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.760 95.100 114.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand 4BZ, ACY, GLC, GOL, NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Primary referenceSgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3mp8.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3MP8
  • CSU: Contacts of Structural Units for 3MP8
  • Structure Factors (214 Kb)
  • Retrieve 3MP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MP8 from S2C, [Save to disk]
  • Re-refined 3mp8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MP8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MP8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mp8_A] [3mp8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MP8
  • Community annotation for 3MP8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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