3MS7 Transferase Transferase Inhibitor date Apr 29, 2010
title Glycogen Phosphorylase Complexed With 2-Chlorobenzaldehyde-4 Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
authors K.M.Alexacou
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Synonym: Myophosphorylase
Ec: 2.4.1.1
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: European Rabbit,Japanese White Rabbit,Dome Rabbit,Rabbits;
Organism_taxid: 9986
Other_details: Muscle
symmetry Space Group: P 43 21 2
R_factor 0.181 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.837 128.837 116.315 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 22S, LLP enzyme Transferase E.C.2.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe binding of beta-d-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: A new class of inhibitors., Alexacou KM, Tenchiu Deleanu AC, Chrysina ED, Charavgi MD, Kostas ID, Zographos SE, Oikonomakos NG, Leonidas DD, Bioorg Med Chem. 2010 Nov 15;18(22):7911-22. Epub 2010 Sep 22. PMID:20947361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3ms7.pdb1.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 3MS7
  • CSU: Contacts of Structural Units for 3MS7
  • Structure Factors (1068 Kb)
  • Retrieve 3MS7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MS7 from S2C, [Save to disk]
  • Re-refined 3ms7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MS7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MS7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MS7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ms7_A] [3ms7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MS7
  • Community annotation for 3MS7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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