3MVD	Signaling Protein Structural Protein Dna	date	May 04, 2010
title	Crystal Structure Of The Chromatin Factor Rcc1 In Complex Wi Nucleosome Core Particle
authors	R.D.Makde, J.R.England, H.P.Yennawar, S.Tan
compound		source
Molecule: Histone H3.2 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Gene: Histone H3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Gene: Histone H4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Gene: Loc494591 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Gene: Histone H2b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
Molecule: Dna (146-Mer) Chain: I Fragment: 147 Bp Widom 601 Dna Fragment (+ Strand) Engineered: Yes		Synthetic: Yes
Molecule: Dna (146-Mer) Chain: J Fragment: 147 Bp Widom 601 Dna Fragment (- Strand) Engineered: Yes		Synthetic: Yes
Molecule: Regulator Of Chromosome Condensation Chain: K, L Fragment: N-Terminal Region (Residues 2-422) Synonym: Chromatin-Binding Protein Bj1 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Bj1, Cg10480, Rcc1 (Bj1) Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst50tr
symmetry	Space Group: P 1 21 1	R_factor 0.175 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.681 183.036 107.030 90.00 101.52 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Structure of RCC1 chromatin factor bound to the nucleosome core particle., Makde RD, England JR, Yennawar HP, Tan S, Nature. 2010 Sep 30;467(7315):562-6. Epub 2010 Aug 25. PMID:20739938

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (743 Kb) [Save to disk] Biological Unit Coordinates (3mvd.pdb1.gz) 736 Kb CSU: Contacts of Structural Units for 3MVD Structure Factors (1055 Kb) Retrieve 3MVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MVD from S2C, [Save to disk] Re-refined 3mvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MVD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MVD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MVD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mvd_J] [3mvd_B] [3mvd_G] [3mvd_E] [3mvd_C] [3mvd_F] [3mvd_H] [3mvd_D] [3mvd_I] [3mvd] [3mvd_K] [3mvd_A] [3mvd_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3MVD: [H2A] [H2B] [H3] [H4 ] by SMART

Other resources with information on 3MVD

Community annotation for 3MVD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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