3MWS Hydrolase Hydrolase Inhibitor date May 06, 2010
title Crystal Structure Of Group N Hiv-1 Protease
authors J.M.Sayer, J.Agniswamy, I.T.Weber, J.M.Louis
compound source
Molecule: Hiv-1 Protease
Chain: A, B
Fragment: Unp Residues 62-160
Ec: 3.4.23.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Gag, Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.940 53.372 66.086 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.09 Å
ligand 017, CL enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAutocatalytic maturation, physical/chemical properties, and crystal structure of group N HIV-1 protease: relevance to drug resistance., Sayer JM, Agniswamy J, Weber IT, Louis JM, Protein Sci. 2010 Nov;19(11):2055-72. PMID:20737578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3mws.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3MWS
  • CSU: Contacts of Structural Units for 3MWS
  • Structure Factors (553 Kb)
  • Retrieve 3MWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MWS from S2C, [Save to disk]
  • Re-refined 3mws structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MWS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MWS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mws_A] [3mws] [3mws_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MWS
  • Community annotation for 3MWS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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