OCA Atlas for 3MYR

3MYR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, F3S, IMD, MG, NFV, SF4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, G, C
H, B, D, F

Primary reference

The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state)., Ogata H, Kellers P, Lubitz W, J Mol Biol. 2010 Sep 17;402(2):428-44. Epub 2010 Jul 29. PMID:20673834

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1071 Kb) [Save to disk]

Biological Unit Coordinates (3myr.pdb1.gz) 270 Kb

Biological Unit Coordinates (3myr.pdb2.gz) 272 Kb

Biological Unit Coordinates (3myr.pdb3.gz) 272 Kb

Biological Unit Coordinates (3myr.pdb4.gz) 272 Kb

Biological Unit Coordinates (3myr.pdb5.gz) 533 Kb

Biological Unit Coordinates (3myr.pdb6.gz) 535 Kb

LPC: Ligand-Protein Contacts for 3MYR

CSU: Contacts of Structural Units for 3MYR

Structure Factors (2560 Kb)

Retrieve 3MYR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3MYR from S2C, [Save to disk]

Re-refined 3myr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MYR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3myr] [3myr_A] [3myr_B] [3myr_C] [3myr_D] [3myr_E] [3myr_F] [3myr_G] [3myr_H]

SWISS-PROT database:

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