3N1F	Protein Binding	date	May 15, 2010
title	Crystal Structure Of Ihhn Bound To Cdofn3
authors	J.M.Kavran, D.J.Leahy
compound		source
Molecule: Indian Hedgehog Protein Chain: A, B Fragment: N-Terminal Domain Synonym: Ihh, Hhg-2, Indian Hedgehog Protein N-Product, Ind Hedgehog Protein C-Product; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ihh Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cell Adhesion Molecule-Relateddown-Regulated By Chain: C, D Fragment: Third Fn3 Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdon, Cdo Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.153 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.758 98.198 144.105 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CA, ZN	enzyme
note	3N1F is a representative structure
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	All mammalian hedgehog proteins interact with CDO and BOC in a conserved manner., Kavran JM, Ward MD, Oladosu OO, Mulepati S, Leahy DJ, J Biol Chem. 2010 Jun 1. PMID:20519495

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk] Biological Unit Coordinates (3n1f.pdb1.gz) 128 Kb Biological Unit Coordinates (3n1f.pdb2.gz) 124 Kb LPC: Ligand-Protein Contacts for 3N1F CSU: Contacts of Structural Units for 3N1F Structure Factors (1033 Kb) Retrieve 3N1F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3N1F from S2C, [Save to disk] Re-refined 3n1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3N1F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3N1F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3N1F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3n1f] [3n1f_B] [3n1f_C] [3n1f_D] [3n1f_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3N1F: [FN3 ] by SMART

Other resources with information on 3N1F

Community annotation for 3N1F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---