3NBS Electron Transport date Jun 04, 2010
title Crystal Structure Of Dimeric Cytochrome C From Horse Heart
authors M.Taketa, H.Komori, S.Hirota, Y.Higuchi
compound source
Molecule: Cytochrome C
Chain: A, B, C, D
Organism_scientific: Equus Caballus
Organism_common: Domestic Horse,Equine
Organism_taxid: 9796
Organ: Heart
symmetry Space Group: P 1
R_factor 0.215 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.753 56.305 60.815 66.28 89.94 73.66
method X-Ray Diffractionresolution 2.20 Å
ligand HEC, PEG, PG4, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCytochrome c polymerization by successive domain swapping at the C-terminal helix., Hirota S, Hattori Y, Nagao S, Taketa M, Komori H, Kamikubo H, Wang Z, Takahashi I, Negi S, Sugiura Y, Kataoka M, Higuchi Y, Proc Natl Acad Sci U S A. 2010 Jul 6. PMID:20615990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3nbs.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3nbs.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3NBS
  • CSU: Contacts of Structural Units for 3NBS
  • Structure Factors (299 Kb)
  • Retrieve 3NBS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NBS from S2C, [Save to disk]
  • Re-refined 3nbs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NBS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NBS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NBS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nbs_C] [3nbs_A] [3nbs_D] [3nbs] [3nbs_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NBS
  • Community annotation for 3NBS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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