3NF1 Motor Protein, Transport Protein date Jun 09, 2010
title Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1
authors Y.Tong, W.Tempel, L.Shen, Y.Shen, L.Nedyalkova, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Kinesin Light Chain 1
Chain: A
Fragment: Unp Residues 203 To 497
Synonym: Klc 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klc1, Klc, Kns2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 31 2 1
R_factor 0.200 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.685 74.685 156.168 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3nf1.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 3NF1
  • Structure Factors (232 Kb)
  • Retrieve 3NF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NF1 from S2C, [Save to disk]
  • Re-refined 3nf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NF1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NF1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r3nf1, region F:18-247,F:364-455 [Jmol] [rasmolscript] [script source]
  • Fold representative 3nf1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nf1] [3nf1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NF1: [TPR ] by SMART
  • Other resources with information on 3NF1
  • Community annotation for 3NF1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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