OCA Atlas for 3NGB

3NGB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BGC, BMA, MAN, NAG, TRS

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, G, A, I

Primary reference

Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01., Zhou T, Georgiev I, Wu X, Yang ZY, Dai K, Finzi A, Do Kwon Y, Scheid JF, Shi W, Xu L, Yang Y, Zhu J, Nussenzweig MC, Sodroski J, Shapiro L, Nabel GJ, Mascola JR, Kwong PD, Science. 2010 Aug 13;329(5993):811-7. Epub 2010 Jul 8. PMID:20616231

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1075 Kb) [Save to disk]

Biological Unit Coordinates (3ngb.pdb1.gz) 271 Kb

Biological Unit Coordinates (3ngb.pdb2.gz) 273 Kb

Biological Unit Coordinates (3ngb.pdb3.gz) 271 Kb

Biological Unit Coordinates (3ngb.pdb4.gz) 271 Kb

LPC: Ligand-Protein Contacts for 3NGB

CSU: Contacts of Structural Units for 3NGB

Structure Factors (1414 Kb)

Retrieve 3NGB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3NGB from S2C, [Save to disk]

Re-refined 3ngb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NGB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ngb] [3ngb_A] [3ngb_B] [3ngb_C] [3ngb_D] [3ngb_E] [3ngb_F] [3ngb_G] [3ngb_H] [3ngb_I] [3ngb_J] [3ngb_K] [3ngb_L]

SWISS-PROT database:

Domains found in 3NGB: [IG_like] [IGv ] by SMART

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