3NHC Protein Fibril date Jun 14, 2010
title Gymlgs Segment 127-132 From Human Prion With M129
authors M.I.Apostol, D.Eisenberg
compound source
Molecule: Major Prion Protein
Chain: A, B
Fragment: Residues 127-132
Synonym: Prp, Prp27-30, Prp33-35c, Ascr
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Gymlgs (Residues 127-132 With M129) From Hum Protein, Synthesized
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
18.150 9.553 45.163 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.57 Å
Primary referenceCrystallographic studies of prion protein (PrP) segments suggest how structural changes encoded by polymorphism at residue 129 modulate susceptibility to human prion disease., Apostol MI, Sawaya MR, Cascio D, Eisenberg D, J Biol Chem. 2010 Sep 24;285(39):29671-5. Epub 2010 Aug 4. PMID:20685658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (3nhc.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 3NHC
  • Structure Factors (28 Kb)
  • Retrieve 3NHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NHC from S2C, [Save to disk]
  • Re-refined 3nhc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NHC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NHC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nhc] [3nhc_B] [3nhc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NHC
  • Community annotation for 3NHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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