3NID date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, GOL, MAN, MG, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary referenceClosed headpiece of integrin alphaIIbbeta3 and its complex with an alphaIIbbeta3-specific antagonist that does not induce opening., Zhu J, Zhu J, Negri A, Provasi D, Filizola M, Coller BS, Springer TA, Blood. 2010 Dec 2;116(23):5050-9. Epub 2010 Aug 2. PMID:20679525
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (904 Kb) [Save to disk]
  • Biological Unit Coordinates (3nid.pdb1.gz) 450 Kb
  • Biological Unit Coordinates (3nid.pdb2.gz) 445 Kb
  • LPC: Ligand-Protein Contacts for 3NID
  • CSU: Contacts of Structural Units for 3NID
  • Structure Factors (1327 Kb)
  • Retrieve 3NID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NID from S2C, [Save to disk]
  • Re-refined 3nid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nid_A] [3nid] [3nid_B] [3nid_C] [3nid_D] [3nid_E] [3nid_F] [3nid_H] [3nid_L]
  • SWISS-PROT database:
  • Domains found in 3NID: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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