3NKM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, CA, EDO, K, MAN, NA, NAG, NKP, SCN, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A phosphodiesterase I activity... scavenger receptor activity
Primary reference	Crystal structure of autotaxin and insight into GPCR activation by lipid mediators., Nishimasu H, Okudaira S, Hama K, Mihara E, Dohmae N, Inoue A, Ishitani R, Takagi J, Aoki J, Nureki O, Nat Struct Mol Biol. 2011 Feb;18(2):205-12. doi: 10.1038/nsmb.1998. Epub 2011 Jan, 16. PMID:21240269

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (3nkm.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 3NKM CSU: Contacts of Structural Units for 3NKM Structure Factors (431 Kb) Retrieve 3NKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NKM from S2C, [Save to disk] Re-refined 3nkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nkm] [3nkm_A] SWISS-PROT database: Domains found in 3NKM: [Endonuclease_NS] [NUC] [SO ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---