3NMA Transferase Rna date Jun 22, 2010
title Mutant P169s Of Foot-And-Mouth Disease Virus Rna Dependent R Polymerase
authors R.Agudo, C.Ferrer-Orta, A.Arias, R.Perez-Luque, N.Verdaguer, E.Do
compound source
Molecule: Genome Polyprotein
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Foot And Mouth Disease Virus C
Organism_taxid: 12116
Strain: C-S8c1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a (Novagen)

Molecule: 5'-R(Gpgpc)-3'
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-R(Pcpc)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 41 21 2
R_factor 0.221 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.834 93.834 121.687 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape., Agudo R, Ferrer-Orta C, Arias A, de la Higuera I, Perales C, Perez-Luque R, Verdaguer N, Domingo E, PLoS Pathog. 2010 Aug 26;6(8). pii: e1001072. PMID:20865120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3nma.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3NMA
  • CSU: Contacts of Structural Units for 3NMA
  • Structure Factors (258 Kb)
  • Retrieve 3NMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMA from S2C, [Save to disk]
  • Re-refined 3nma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NMA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nma] [3nma_B] [3nma_A] [3nma_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NMA
  • Community annotation for 3NMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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