3NN7 Hydrolase date Jun 23, 2010
title Crystal Structure Of Thermolysin In Complex With 2-Bromoacet
authors J.Behnen, A.Heine, G.Klebe
compound source
Molecule: Thermolysin
Chain: A
Synonym: Thermostable Neutral Proteinase
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.947 92.947 129.951 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand BXA, CA, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExperimental and Computational Active Site Mapping as a Starting Point to Fragment-Based Lead Discovery., Behnen J, Koster H, Neudert G, Craan T, Heine A, Klebe G, ChemMedChem. 2011 Dec 23. doi: 10.1002/cmdc.201100490. PMID:22213702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3nn7.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3NN7
  • CSU: Contacts of Structural Units for 3NN7
  • Structure Factors (144 Kb)
  • Retrieve 3NN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NN7 from S2C, [Save to disk]
  • Re-refined 3nn7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NN7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NN7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nn7_A] [3nn7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NN7
  • Community annotation for 3NN7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science