3NPC	Transferase Transferase Inhibitor	date	Jun 28, 2010
title	Crystal Structure Of Jnk2 Complexed With Birb796
authors	A.Kuglstatter, M.Ghate
compound		source
Molecule: Mitogen-Activated Protein Kinase 9 Chain: A, B Fragment: Unp Residues 1-364 Synonym: Map Kinase 9, Mapk 9, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 2, Jnk-55; Ec: 2.7.11.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk9, Jnk2, Prkm9 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.170 92.339 112.109 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	B96 BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	X-ray crystal structure of JNK2 complexed with the p38alpha inhibitor BIRB796: Insights into the rational design of DFG-out binding MAP kinase inhibitors., Kuglstatter A, Ghate M, Tsing S, Villasenor AG, Shaw D, Barnett JW, Browner MF, Bioorg Med Chem Lett. 2010 Jul 22. PMID:20655210

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (3npc.pdb1.gz) 62 Kb Biological Unit Coordinates (3npc.pdb2.gz) 62 Kb Biological Unit Coordinates (3npc.pdb3.gz) 120 Kb LPC: Ligand-Protein Contacts for 3NPC CSU: Contacts of Structural Units for 3NPC Structure Factors (264 Kb) Retrieve 3NPC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NPC from S2C, [Save to disk] Re-refined 3npc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NPC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NPC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NPC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3npc_A] [3npc_B] [3npc] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3NPC: [S_TKc ] by SMART

Other resources with information on 3NPC

Community annotation for 3NPC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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