3NTG Oxidoreductase date Jul 04, 2010
title Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
authors J.L.Wang, D.Limburg, M.J.Graneto, J.C.Carter, J.J.Talley, J.R.Kie
compound source
Molecule: Prostaglandin Gh Synthase 2
Chain: A, B, C, D
Fragment: Mcox-2 C Delta (Unp Residues 18 To 604)
Synonym: Cyclooxygenase-2, Cox-2, Glucocorticoid-Regulated Inflammatory Cyclooxygenase, Gripghs, Macrophage Activation Associated Marker Protein P7173, Pes-2, Phs II, Prostaglan Synthase 2, Pgh Synthase 2, Pghs-2, Prostaglandin-Endoperox Synthase 2, Tis10 Protein;
Ec: 1.14.99.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cox-2, Cox2, Mcg_5001, Pghs-B, Ptgs2, Tis10
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.206 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.268 134.273 122.615 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand BOG, D72, HEM, NAG enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene MCG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • peroxidase activity


  • Primary referenceThe novel benzopyran class of selective cyclooxygenase-2 inhibitors. Part 2: The second clinical candidate having a shorter and favorable human half-life., Wang JL, Limburg D, Graneto MJ, Springer J, Hamper JR, Liao S, Pawlitz JL, Kurumbail RG, Maziasz T, Talley JJ, Kiefer JR, Carter J, Bioorg Med Chem Lett. 2010 Jul 24. PMID:20709553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (752 Kb) [Save to disk]
  • Biological Unit Coordinates (3ntg.pdb1.gz) 373 Kb
  • Biological Unit Coordinates (3ntg.pdb2.gz) 374 Kb
  • LPC: Ligand-Protein Contacts for 3NTG
  • CSU: Contacts of Structural Units for 3NTG
  • Structure Factors (2231 Kb)
  • Retrieve 3NTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NTG from S2C, [Save to disk]
  • Re-refined 3ntg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ntg] [3ntg_C] [3ntg_B] [3ntg_D] [3ntg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NTG: [EGF ] by SMART
  • Other resources with information on 3NTG
  • Community annotation for 3NTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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