3NUS Transferase date Jul 07, 2010
title Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
authors N.Campobasso, P.Ward
compound source
Molecule: Phosphoinositide-Dependent Kinase-1
Chain: A
Fragment: Unp Residues 65-350
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkb-Like 1
Expression_system: Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 32 2 1
R_factor 0.174 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.497 123.497 47.087 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand GOL, JNZ, SEP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery., Medina JR, Blackledge CW, Heerding DA, Campobasso N, Ward P, Briand J, Wright L, Axten JM, ACS Med Chem Lett. 2010 Jul 22;1(8):439-42. doi: 10.1021/ml100136n. eCollection, 2010 Nov 11. PMID:24900229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3nus.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3nus.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3NUS
  • CSU: Contacts of Structural Units for 3NUS
  • Structure Factors (151 Kb)
  • Retrieve 3NUS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NUS from S2C, [Save to disk]
  • Re-refined 3nus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NUS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NUS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NUS, from MSDmotif at EBI
  • Fold representative 3nus from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nus] [3nus_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NUS: [S_TKc ] by SMART
  • Other resources with information on 3NUS
  • Community annotation for 3NUS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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