3NVY Oxidoreductase date Jul 08, 2010
title Crystal Structure Of Bovine Xanthine Oxidase In Complex With
authors H.Cao, R.Hille
compound source
Molecule: Xanthine Dehydrogenaseoxidase
Chain: A, J
Fragment: Iron-Sulfur Binding Domain
Synonym: Xanthine Dehydrogenase, Xd, Xanthine Oxidase, Xo, Oxidoreductase;
Ec: 1.17.1.4, 1.17.3.2
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
Other_details: Milk

Molecule: Xanthine Dehydrogenaseoxidase
Chain: B, K
Fragment: Flavin Binding Domain
Synonym: Xanthine Dehydrogenase, Xd, Xanthine Oxidase, Xo, Oxidoreductase;
Ec: 1.17.1.4, 1.17.3.2

Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
Other_details: Milk

Molecule: Xanthine Dehydrogenaseoxidase
Chain: C, L
Fragment: Molybdenum Binding Domain
Synonym: Xanthine Dehydrogenase, Xd, Xanthine Oxidase, Xo, Oxidoreductase;
Ec: 1.17.1.4, 1.17.3.2

Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
Other_details: Milk
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.686 73.398 138.210 90.00 97.13 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FAD, FES, MOS, MTE, QUE BindingDB enzyme Oxidoreductase E.C.1.17.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, J


C, L


K, B


Primary referenceX-ray Crystal Structure of a Xanthine Oxidase Complex with the Flavonoid Inhibitor Quercetin., Cao H, Pauff JM, Hille R, J Nat Prod. 2014 Jul 25;77(7):1693-9. doi: 10.1021/np500320g. Epub 2014 Jul 1. PMID:25060641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk]
  • Biological Unit Coordinates (3nvy.pdb1.gz) 400 Kb
  • LPC: Ligand-Protein Contacts for 3NVY
  • CSU: Contacts of Structural Units for 3NVY
  • Structure Factors (2759 Kb)
  • Retrieve 3NVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NVY from S2C, [Save to disk]
  • Re-refined 3nvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nvy_J] [3nvy_C] [3nvy_B] [3nvy] [3nvy_K] [3nvy_L] [3nvy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NVY: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 3NVY
  • Community annotation for 3NVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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