3NWB Transferase Transferase Inhibitor date Jul 09, 2010
title Rat Comt In Complex With A Fluorinated Desoxyribose-Containi Bisubstrate Inhibitor Avoids Hydroxyl Group
authors A.Ehler, D.Schlatter, M.Stihle, J.Benz, M.G.Rudolph
compound source
Molecule: Catechol O-Methyltransferase
Chain: A
Fragment: Soluble Form, Unp Residues 44-264
Ec: 2.1.1.6
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Tissue: Liver
Gene: Comt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pds56rbsii
symmetry Space Group: P 21 21 21
R_factor 0.132 R_Free 0.164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.389 55.351 79.356 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 659, CL, MG, NHE, SO4 enzyme Transferase E.C.2.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatechol-O-methyltransferase in complex with substituted 3'-deoxyribose bisubstrate inhibitors., Ellermann M, Lerner C, Burgy G, Ehler A, Bissantz C, Jakob-Roetne R, Paulini R, Allemann O, Tissot H, Grunstein D, Stihle M, Diederich F, Rudolph MG, Acta Crystallogr D Biol Crystallogr. 2012 Mar;68(Pt 3):253-60. Epub 2012 Feb 14. PMID:22349227
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (3nwb.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 3NWB
  • CSU: Contacts of Structural Units for 3NWB
  • Structure Factors (726 Kb)
  • Retrieve 3NWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NWB from S2C, [Save to disk]
  • Re-refined 3nwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NWB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NWB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nwb_A] [3nwb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NWB
  • Community annotation for 3NWB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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