OCA Atlas for 3NX2

3NX2

Lyase

date

Jul 12, 2010

title

Enterobacter Sp. Px6-4 Ferulic Acid Decarboxylase In Complex Substrate Analogues

authors

W.Gu, J.K.Yang, Z.Y.Lou, Z.H.Meng, K.Q.Zhang

compound

source

Molecule: Ferulic Acid Decarboxylase
Chain: A, B
Ec: 4.1.1.-
Engineered: Yes

Organism_scientific: Enterobacter Sp. Px6-4
Organism_taxid: 418698
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

symmetry

Space Group: P 1 21 1

R_factor

0.189

R_Free

0.236

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
43.334	88.740	49.017	90.00	102.30	90.00

method

X-Ray Diffraction

resolution

2.01 Å

ligand

FER

enzyme

Lyase E.C.4.1.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4., Gu W, Yang J, Lou Z, Liang L, Sun Y, Huang J, Li X, Cao Y, Meng Z, Zhang KQ, PLoS One. 2011 Jan 21;6(1):e16262. PMID:21283705

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]

Biological Unit Coordinates (3nx2.pdb1.gz) 29 Kb

Biological Unit Coordinates (3nx2.pdb2.gz) 29 Kb

Biological Unit Coordinates (3nx2.pdb3.gz) 57 Kb

LPC: Ligand-Protein Contacts for 3NX2

CSU: Contacts of Structural Units for 3NX2

Structure Factors (354 Kb)

Retrieve 3NX2 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3NX2 from S2C, [Save to disk]

Re-refined 3nx2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NX2 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NX2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3NX2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nx2] [3nx2_B] [3nx2_A]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 3NX2

Community annotation for 3NX2 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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