OCA Atlas for 3O3D

3O3D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3AZ, GOL, TIG

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, B		cellular response to iron io...

Primary reference

Crystal structures of HLA-A*0201 complexed with Melan-A/MART-1(26(27L)-35) peptidomimetics reveal conformational heterogeneity and highlight degeneracy of T cell recognition., Douat-Casassus C, Borbulevych O, Tarbe M, Gervois N, Jotereau F, Baker BM, Quideau S, J Med Chem. 2010 Oct 14;53(19):7061-6. PMID:20806940

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]

Biological Unit Coordinates (3o3d.pdb1.gz) 136 Kb

Biological Unit Coordinates (3o3d.pdb2.gz) 137 Kb

LPC: Ligand-Protein Contacts for 3O3D

CSU: Contacts of Structural Units for 3O3D

Structure Factors (1295 Kb)

Retrieve 3O3D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3O3D from S2C, [Save to disk]

Re-refined 3o3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O3D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o3d_A] [3o3d_B] [3o3d_C] [3o3d_D] [3o3d_E] [3o3d_F] [3o3d]

SWISS-PROT database:

Domain found in 3O3D: [IGc1 ] by SMART

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