3O8B Hydrolase date Aug 02, 2010
title Visualizing Atp-Dependent Rna Translocation By The Ns3 Helic Hcv
authors T.C.Appleby, J.R.Somoza
compound source
Molecule: Hcv Ns3 Proteasehelicase
Chain: A, B
Engineered: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 31647
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
91.299 111.955 139.927 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand SO4, ZN enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceVisualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV., Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R, Liu X, Brendza KM, Somoza JR, J Mol Biol. 2010 Dec 9. PMID:21145896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (3o8b.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (3o8b.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3O8B
  • CSU: Contacts of Structural Units for 3O8B
  • Structure Factors (926 Kb)
  • Retrieve 3O8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O8B from S2C, [Save to disk]
  • Re-refined 3o8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O8B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O8B, from MSDmotif at EBI
  • Fold representative 3o8b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o8b_B] [3o8b] [3o8b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O8B: [DEXDc ] by SMART
  • Other resources with information on 3O8B
  • Community annotation for 3O8B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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