3O8O	Transferase	date	Aug 03, 2010
title	Structure Of Phosphofructokinase From Saccharomyces Cerevisi
authors	K.Banaszak, I.Mechin, G.Kopperschlager, W.Rypniewski
compound		source
Molecule: 6-Phosphofructokinase Subunit Alpha Chain: A, C, E, G Synonym: Phosphofructokinase 1, Phosphohexokinase, 6pf-1-K Alpha; Ec: 2.7.1.11 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Pfk1, Ygr240c, G8599 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Ps1
Molecule: 6-Phosphofructokinase Subunit Beta Chain: B, D, F, H Synonym: Phosphofructokinase 2, Phosphohexokinase, 6pf-1-K Beta; Ec: 2.7.1.11 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Pfk2, Ymr205c, Ym8325.06c Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Ps1
symmetry	Space Group: P 21 21 21	R_factor 0.259 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 180.046 186.205 236.507 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	F6P, FDP	enzyme	Transferase E.C.2.7.1.11 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	The Crystal Structures of Eukaryotic Phosphofructokinases from Baker's Yeast and Rabbit Skeletal Muscle., Banaszak K, Mechin I, Obmolova G, Oldham M, Chang SH, Ruiz T, Radermacher M, Kopperschlager G, Rypniewski W, J Mol Biol. 2011 Jan 15. PMID:21241708

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (911 Kb) [Save to disk] Biological Unit Coordinates (3o8o.pdb1.gz) 454 Kb Biological Unit Coordinates (3o8o.pdb2.gz) 458 Kb LPC: Ligand-Protein Contacts for 3O8O CSU: Contacts of Structural Units for 3O8O Structure Factors (1545 Kb) Retrieve 3O8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O8O from S2C, [Save to disk] Re-refined 3o8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3O8O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O8O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o8o_D] [3o8o_G] [3o8o_H] [3o8o_E] [3o8o_B] [3o8o_C] [3o8o_A] [3o8o_F] [3o8o] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3O8O

Community annotation for 3O8O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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