3O9L Hydrolase Hydrolase Inhibitor date Aug 04, 2010
title Design And Optimisation Of New Piperidines As Renin Inhibito
authors O.Corminboeuf, O.Bezencon, C.Grisostomi, L.Remen, S.Richard-Bild D.Bur, L.Prade, P.Hess, P.Strickner, A.Treiber
compound source
Molecule: Renin
Chain: A, C
Fragment: Unp Residues 67-232
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Renin
Chain: B, D
Fragment: Unp Residues 237-406
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 21 21 21
R_factor 0.245 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.031 90.366 120.774 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand LPN, NAG BindingDB enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDesign and optimization of new piperidines as renin inhibitors., Corminboeuf O, Bezencon O, Grisostomi C, Remen L, Richard-Bildstein S, Bur D, Prade L, Hess P, Strickner P, Fischli W, Steiner B, Treiber A, Bioorg Med Chem Lett. 2010 Nov 1;20(21):6286-90. Epub 2010 Aug 22. PMID:20843686
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3o9l.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (3o9l.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3O9L
  • CSU: Contacts of Structural Units for 3O9L
  • Structure Factors (338 Kb)
  • Retrieve 3O9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O9L from S2C, [Save to disk]
  • Re-refined 3o9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O9L, from MSDmotif at EBI
  • Fold representative 3o9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o9l_C] [3o9l_B] [3o9l_A] [3o9l] [3o9l_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3O9L
  • Community annotation for 3O9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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