3OB4 Allergen date Aug 06, 2010
title Mbp-Fusion Protein Of The Major Peanut Allergen Ara H 2
authors G.A.Mueller, R.A.Gosavi, A.F.Moon, R.E.London, L.C.Pedersen
compound source
Molecule: Maltose Abc Transporter Periplasmic Protein,Arah
Chain: A
Fragment: Mbp, Unp Residues 27-392,Arah2, Unp Residues 28-1
Engineered: Yes
Mutation: Yes
Other_details: Chimera Protein Is Made With Surface Mutatio Mbp As Well As A Fixed Arm Linker To The Arah2 Protein,Chim Protein Is Made With Surface Mutations On The Mbp As Well A Arm Linker To The Arah2 Protein
Organism_scientific: Escherichia Coli, Arachis Hypogaea
Organism_common: Peanut
Organism_taxid: 562, 3818
Gene: Hmpref9530_03068, Ara H 2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Orgamib(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalx
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.847 87.381 113.137 90.00 103.93 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand CL, GLC, SO4 enzyme
Gene HMPREF9530
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3ob4.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 3OB4
  • CSU: Contacts of Structural Units for 3OB4
  • Structure Factors (219 Kb)
  • Retrieve 3OB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OB4 from S2C, [Save to disk]
  • Re-refined 3ob4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OB4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OB4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ob4_A] [3ob4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OB4: [AAI ] by SMART
  • Other resources with information on 3OB4
  • Community annotation for 3OB4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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