OCA Atlas for 3ODA

3ODA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, F, E, H, B, A, D, G

Primary reference

Crystal Structures of Poly(ADP-ribose) Polymerase-1 (PARP-1) Zinc Fingers Bound to DNA: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY., Langelier MF, Planck JL, Roy S, Pascal JM, J Biol Chem. 2011 Mar 25;286(12):10690-701. Epub 2011 Jan 13. PMID:21233213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]

Biological Unit Coordinates (3oda.pdb1.gz) 40 Kb

Biological Unit Coordinates (3oda.pdb2.gz) 41 Kb

Biological Unit Coordinates (3oda.pdb3.gz) 40 Kb

Biological Unit Coordinates (3oda.pdb4.gz) 41 Kb

LPC: Ligand-Protein Contacts for 3ODA

CSU: Contacts of Structural Units for 3ODA

Structure Factors (1402 Kb)

Retrieve 3ODA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ODA from S2C, [Save to disk]

Re-refined 3oda structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ODA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oda] [3oda_A] [3oda_B] [3oda_C] [3oda_D] [3oda_E] [3oda_F] [3oda_G] [3oda_H] [3oda_I] [3oda_J] [3oda_K] [3oda_L] [3oda_M] [3oda_N] [3oda_O] [3oda_P]

SWISS-PROT database:

Domain found in 3ODA: [zf-PARP ] by SMART

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