3OFJ Transferase date Aug 15, 2010
title Crystal Structure Of N-Methyltransferase Nods From Bradyrhiz Japonicum Wm9
authors O.Cakici, M.Sikorski, T.Stepkowski, G.Bujacz, M.Jaskolski
compound source
Molecule: Nodulation Protein S
Chain: A
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Bradyrhizobium Sp.
Organism_taxid: 133505
Strain: Wm9
Gene: Nods
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Codonplus(De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d-Topo
symmetry Space Group: P 43 2 2
R_factor 0.203 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.700 48.700 141.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand
enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of NodS N-Methyltransferase from Bradyrhizobium japonicum in Ligand-Free Form and as SAH Complex., Cakici O, Sikorski M, Stepkowski T, Bujacz G, Jaskolski M, J Mol Biol. 2010 Oct 21. PMID:20970431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3ofj.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 3OFJ
  • Structure Factors (46 Kb)
  • Retrieve 3OFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OFJ from S2C, [Save to disk]
  • Re-refined 3ofj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OFJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OFJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ofj_A] [3ofj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OFJ
  • Community annotation for 3OFJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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