3OGD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BRU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Escherichia coli AlkA in Complex with Undamaged DNA., Bowman BR, Lee S, Wang S, Verdine GL, J Biol Chem. 2010 Nov 12;285(46):35783-91. Epub 2010 Sep 15. PMID:20843803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3ogd.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3OGD
  • CSU: Contacts of Structural Units for 3OGD
  • Structure Factors (249 Kb)
  • Retrieve 3OGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OGD from S2C, [Save to disk]
  • Re-refined 3ogd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ogd] [3ogd_A] [3ogd_B] [3ogd_C]
  • SWISS-PROT database:
  • Domains found in 3OGD: [AlkA_N] [ENDO3c ] by SMART

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