3OOZ	Hydrolase Hydrolase Inhibitor	date	Aug 31, 2010
title	Bace1 In Complex With The Aminohydantoin Compound 102
authors	A.M.Olland
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Bace-1 Catalytic Domain (Unp Reisudes 46-454) Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Site App Cleaving Enzyme 1, Membrane-Associated Aspartic Pr Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.215 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.927 104.664 50.540 90.00 94.91 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZOO BindingDB	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of aminohydantoins as potent and selective human beta-secretase (BACE1) inhibitors with enhanced brain permeability., Malamas MS, Robichaud A, Erdei J, Quagliato D, Solvibile W, Zhou P, Morris K, Turner J, Wagner E, Fan K, Olland A, Jacobsen S, Reinhart P, Riddell D, Pangalos M, Bioorg Med Chem Lett. 2010 Nov 15;20(22):6597-605. Epub 2010 Sep 15. PMID:20880704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (3ooz.pdb1.gz) 120 Kb LPC: Ligand-Protein Contacts for 3OOZ CSU: Contacts of Structural Units for 3OOZ Structure Factors (515 Kb) Retrieve 3OOZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OOZ from S2C, [Save to disk] Re-refined 3ooz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OOZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OOZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OOZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ooz_A] [3ooz] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OOZ

Community annotation for 3OOZ at PDBWiki (http://pdbwiki.org)

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