3OPM	Hydrolase Hydrolase Inhibitor	date	Sep 01, 2010
title	Crystal Structure Of Human Dpp4 Bound To Tak-294
authors	J.K.Yano, K.Aertgeerts
compound		source
Molecule: Dipeptidyl Peptidase 4 Chain: A, B, C, D Fragment: Dpp4 Synonym: Dipeptidyl Peptidase Iv, Dpp Iv, T-Cell Activation Cd26, Tp103, Adenosine Deaminase Complexing Protein 2, Adcp Ec: 3.4.14.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adcp2, Cd26, Dpp4 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1 21 1	R_factor 0.195 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.771 122.557 144.737 90.00 115.00 90.00
method	X-Ray Diffraction	resolution	2.72 Å
ligand	LUI, NAG	enzyme	Hydrolase E.C.3.4.14.5 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B virus receptor activity chemorepellent activity
Primary reference	Identification of 3-aminomethyl-1,2-dihydro-4-phenyl-1-isoquinolones: a new class of potent, selective, and orally active non-peptide dipeptidyl peptidase IV inhibitors that form a unique interaction with Lys554., Banno Y, Miyamoto Y, Sasaki M, Oi S, Asakawa T, Kataoka O, Takeuchi K, Suzuki N, Ikedo K, Kosaka T, Tsubotani S, Tani A, Funami M, Tawada M, Yamamoto Y, Aertgeerts K, Yano J, Maezaki H, Bioorg Med Chem. 2011 Aug 15;19(16):4953-70. Epub 2011 Jun 28. PMID:21764322

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (998 Kb) [Save to disk] Biological Unit Coordinates (3opm.pdb1.gz) 992 Kb Biological Unit Coordinates (3opm.pdb2.gz) 499 Kb Biological Unit Coordinates (3opm.pdb3.gz) 497 Kb LPC: Ligand-Protein Contacts for 3OPM CSU: Contacts of Structural Units for 3OPM Structure Factors (1565 Kb) Retrieve 3OPM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OPM from S2C, [Save to disk] Re-refined 3opm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OPM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OPM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OPM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3opm_A] [3opm_D] [3opm] [3opm_B] [3opm_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OPM

Community annotation for 3OPM at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---