3ORK Transferase date Sep 07, 2010
title Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (C Form 2)
authors N.Echols, T.N.Lombana, N.D.Thomsen, H.L.Ng, T.Alber, Tb Structur Genomics Consortium (Tbsgc)
compound source
Molecule: Serinethreonine Protein Kinase
Chain: A
Fragment: Kinase Domain (Unp Residues 1 To 308)
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 419947
Strain: H37rv
Gene: Mra_0016, Pknb, Pknb (Rv0014c)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.341 51.603 155.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand AGS, MN, SO4, TRS enzyme
note 3ORK is a representative structure
Gene MRA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3ork.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3ORK
  • CSU: Contacts of Structural Units for 3ORK
  • Structure Factors (290 Kb)
  • Retrieve 3ORK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ORK from S2C, [Save to disk]
  • Re-refined 3ork structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ORK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ORK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ORK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ork] [3ork_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ORK: [S_TKc ] by SMART
  • Other resources with information on 3ORK
  • Community annotation for 3ORK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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