3OTY	Hydrolase Peptide	date	Sep 14, 2010
title	Mdr769 Hiv-1 Protease Complexed With Rtrh Hepta-Peptide
authors	Z.Liu, Y.Wang, J.Brunzelle, I.A.Kovari, L.C.Kovari
compound		source
Molecule: Mdr Hiv-1 Protease Chain: A, B Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rtrh Substrate Peptide Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus 1 Organism_common: Hiv-1 Organism_taxid: 11676 Other_details: This Sequence Occurs Naturally In Hiv-1
symmetry	Space Group: P 41	R_factor 0.185 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.576 45.576 102.368 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Nine Crystal Structures Determine the Substrate Envelope of the MDR HIV-1 Protease., Liu Z, Wang Y, Brunzelle J, Kovari IA, Kovari LC, Protein J. 2011 Mar 12. PMID:21394574

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (3oty.pdb1.gz) 38 Kb CSU: Contacts of Structural Units for 3OTY Structure Factors (299 Kb) Retrieve 3OTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OTY from S2C, [Save to disk] Re-refined 3oty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OTY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OTY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OTY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oty] [3oty_P] [3oty_A] [3oty_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OTY

Community annotation for 3OTY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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