3OUG Lyase date Sep 14, 2010
title Crystal Structure Of Cleaved L-Aspartate-Alpha-Decarboxylase Francisella Tularensis
authors B.Nocek, M.Gu, L.Papazisi, W.Anderson, A.Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Aspartate 1-Decarboxylase
Chain: A, B, C, E, F, G, H, I
Synonym: Aspartate Alpha-Decarboxylase, Aspartate 1-Decarbo Beta Chain, Aspartate 1-Decarboxylase Alpha Chain;
Ec: 4.1.1.11
Engineered: Yes
Organism_scientific: Francisella Tularensis Subsp. Tularens
Organism_taxid: 177416
Strain: Schu S4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.934 80.525 85.025 90.00 104.33 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CL, GOL, MSE enzyme Lyase E.C.4.1.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, F, A, C, I, G, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (3oug.pdb1.gz) 154 Kb
  • Biological Unit Coordinates (3oug.pdb2.gz) 158 Kb
  • Biological Unit Coordinates (3oug.pdb3.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 3OUG
  • CSU: Contacts of Structural Units for 3OUG
  • Structure Factors (2498 Kb)
  • Retrieve 3OUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUG from S2C, [Save to disk]
  • Re-refined 3oug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OUG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OUG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oug_G] [3oug_H] [3oug_C] [3oug_I] [3oug_A] [3oug_F] [3oug] [3oug_B] [3oug_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OUG
  • Community annotation for 3OUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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