3OWD Chaperone date Sep 17, 2010
title Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone II
authors C.H.Park
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.165 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.943 85.574 96.844 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand MEY BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceN-aryl-benzimidazolones as novel small molecule HSP90 inhibitors., Bruncko M, Tahir SK, Song X, Chen J, Ding H, Huth JR, Jin S, Judge RA, Madar DJ, Park CH, Park CM, Petros AM, Tse C, Rosenberg SH, Elmore SW, Bioorg Med Chem Lett. 2010 Dec 15;20(24):7503-6. Epub 2010 Oct 12. PMID:21106457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3owd.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3OWD
  • CSU: Contacts of Structural Units for 3OWD
  • Structure Factors (253 Kb)
  • Retrieve 3OWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWD from S2C, [Save to disk]
  • Re-refined 3owd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OWD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OWD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owd_A] [3owd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OWD: [HATPase_c ] by SMART
    • Other resources with information on 3OWD
  • Community annotation for 3OWD at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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