3OX8 Crystal Structure of HLA A*02:03 Bound to HBV Core 18-27 date
authors Liu, J., Chen, Y., Lai, L., Ren, E.
compound source
symmetry
R_factor
R_Free 0.23409
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.16
Gene
Ontology
ChainFunctionProcessComponent
E, B
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  • Primary referenceStructural insights into the binding of hepatitis B virus core peptide to HLA-A2 alleles: Towards designing better vaccines., Liu J, Chen KY, Ren EC, Eur J Immunol. 2011 Jul;41(7):2097-106. doi: 10.1002/eji.201041370. PMID:21538979
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3ox8.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3ox8.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 3OX8
  • Structure Factors (878 Kb)
  • Retrieve 3OX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OX8 from S2C, [Save to disk]
  • Re-refined 3ox8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OX8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OX8, from MSDmotif at EBI
  • Fold representative 3ox8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ox8_A] [3ox8] [3ox8_D] [3ox8_C] [3ox8_B] [3ox8_F] [3ox8_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OX8: [IGc1 ] by SMART
  • Other resources with information on 3OX8
  • Community annotation for 3OX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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