3OYA Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolution date
authors Hare, S., Cherepanov, P.
compound source
symmetry
R_factor
R_Free 0.2282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand GOL, MG, NH4, RLT, SO4, ZN enzyme
note 3OYA (Molecule of the Month:pdb135)supersedes 3L2T
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance., Hare S, Vos AM, Clayton RF, Thuring JW, Cummings MD, Cherepanov P, Proc Natl Acad Sci U S A. 2010 Oct 28. PMID:21030679
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (3oya.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 3OYA
  • CSU: Contacts of Structural Units for 3OYA
  • Structure Factors (659 Kb)
  • Retrieve 3OYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OYA from S2C, [Save to disk]
  • Re-refined 3oya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OYA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OYA, from MSDmotif at EBI
  • Fold representative 3oya from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oya_B] [3oya_D] [3oya_C] [3oya] [3oya_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OYA
  • Community annotation for 3OYA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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