3OYP	Hydrolase Hydrolase Inhibitor	date	Sep 23, 2010
title	Hcv Ns34a In Complex With Ligand 3
authors	M.Hagel, D.Niu, T.St.Martin, M.P.Sheets, L.Qiao, H.Bernard, R.M.Ka M.T.Labenski, P.C.Chaturvedi, M.Nacht, W.F.Westlin, R.C.Petter,
compound		source
Molecule: Serine Protease Ns3 Chain: A, B Fragment: Proteasehelicase Ns3 (P70), Unp Residues 1027-12 Synonym: Hepacivirin, Ns3p, P70 Ec: 3.4.21.98, 3.6.1.15, 3.6.4.13 Engineered: Yes		Organism_scientific: Hepatitis C Virus (Isolate Japanese) Organism_common: Hcv Organism_taxid: 11116 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Non-Structural Protein 4a Chain: C, D Fragment: Nonstructural Protein Ns4a (P4), Unp Residues 167 Synonym: Ns4a, P8 Engineered: Yes		Organism_scientific: Hepatitis C Virus (Isolate Japanese) Organism_common: Hcv Organism_taxid: 11116 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Peptidomimetic Inhibitor Chain: E, F Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 61	R_factor 0.215 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.401 94.401 83.129 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.76 Å
ligand	0Y8, 0Y9, 0YA, DAL, PPI, ZN	enzyme	Hydrolase E.C.3.4.21.98 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Selective irreversible inhibition of a protease by targeting a noncatalytic cysteine., Hagel M, Niu D, St Martin T, Sheets MP, Qiao L, Bernard H, Karp RM, Zhu Z, Labenski MT, Chaturvedi P, Nacht M, Westlin WF, Petter RC, Singh J, Nat Chem Biol. 2011 Jan;7(1):22-4. Epub 2010 Nov 28. PMID:21113170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (3oyp.pdb1.gz) 30 Kb Biological Unit Coordinates (3oyp.pdb2.gz) 30 Kb LPC: Ligand-Protein Contacts for 3OYP CSU: Contacts of Structural Units for 3OYP Structure Factors (87 Kb) Retrieve 3OYP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OYP from S2C, [Save to disk] Re-refined 3oyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OYP in 3D

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Visual 3D analysis of 3OYP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OYP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oyp_B] [3oyp_A] [3oyp] [3oyp_C] [3oyp_F] [3oyp_D] [3oyp_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OYP

Community annotation for 3OYP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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