3P0S Crystal structure of Bombyx mori densovirus 1 capsid date
authors Kaufmann, B., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Bombyx mori Densovirus 1, a Silkworm Pathogen., Kaufmann B, El-Far M, Plevka P, Bowman VD, Li Y, Tijssen P, Rossmann MG, J Virol. 2011 Mar 2. PMID:21367906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0s.pdb1.gz) 3837 Kb
  • CSU: Contacts of Structural Units for 3P0S
  • Structure Factors (7068 Kb)
  • Retrieve 3P0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0S from S2C, [Save to disk]
  • Re-refined 3p0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P0S
  • VIPERdb: visual, structural and computational analysis of 3P0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P0S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0s_A] [3p0s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P0S
  • Community annotation for 3P0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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