3PCW Hydrolase Hydrolase Inhibitor date Oct 22, 2010
title Endothiapepsin In Complex With A Fragment
authors H.Koester, A.Heine, G.Klebe
compound source
Molecule: Endothiapepsin
Chain: A
Synonym: Aspartate Protease
Ec: 3.4.23.22
Organism_scientific: Cryphonectria Parasitica
Organism_common: Chesnut Blight Fungus
Organism_taxid: 5116
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.320 73.060 52.520 90.00 109.51 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand DMS, FBF, GOL enzyme Hydrolase E.C.3.4.23.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Small Nonrule of 3 Compatible Fragment Library Provides High Hit Rate of Endothiapepsin Crystal Structures with Various Fragment Chemotypes., Koster H, Craan T, Brass S, Herhaus C, Zentgraf M, Neumann L, Heine A, Klebe G, J Med Chem. 2011 Oct 25. PMID:21972967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3pcw.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 3PCW
  • CSU: Contacts of Structural Units for 3PCW
  • Structure Factors (616 Kb)
  • Retrieve 3PCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PCW from S2C, [Save to disk]
  • Re-refined 3pcw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PCW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PCW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pcw_A] [3pcw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PCW
  • Community annotation for 3PCW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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