3PDV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NA enzyme
Primary referencePDlim2 selectively interacts with the PDZ binding motif of highly pathogenic avian H5N1 influenza A virus NS1., Yu J, Li X, Wang Y, Li B, Li H, Li Y, Zhou W, Zhang C, Wang Y, Rao Z, Bartlam M, Cao Y, PLoS One. 2011;6(5):e19511. Epub 2011 May 23. PMID:21625420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (3pdv.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 3PDV
  • CSU: Contacts of Structural Units for 3PDV
  • Structure Factors (73 Kb)
  • Retrieve 3PDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PDV from S2C, [Save to disk]
  • Re-refined 3pdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pdv] [3pdv_A]
  • SWISS-PROT database:
  • Domain found in 3PDV: [PDZ ] by SMART

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